![]() Basis knowledge of molecular biology is assumed. Participants are expected to have a general familiarity with computers. It consists of lectures in combination with computer exercises.ĪMC PhD candidates involved or interested in the analysis of nucleotide sequence data. The course runs once a year for a full week (Monday to Friday). You will also learn to analyze NGS data sets (e.g. In this course you will be introduced to basic nucleotide sequence analysis approaches such as sequence alignment. for the identification of genes) but also the analysis of large next generation sequencing (NGS) experiments. It involves the analysis of single sequences (e.g. Sequence analysis is one of the major topics in bioinformatics. 1999‑2023 - All Rights Reserved.This course aims to introduce participants to sequence analysis approaches and to provide them with hands-on experience in using publicly available tools. Programs and databases for comparative analysis of genomic sequences.Ĭopyright © Israel Science and Technology Directory. Open-source tool to find and classify phenotypic correlations for variations in whole genomes.Ĭlassification of predicted open-reading frames (ORFs) from viral metagenomes. Searching transcription factor binding sites (TATA boxes, GC boxes, CCAAT boxes, transcription start sites (TSS). Genetic linkage analysis with input-output relationships similar to those in standard genetic linkage programs. Software for next generation sequencing technologies, transcriptome analysis (with RNASeq data), SNP detection and selection of disease specific SNP subsets JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. Program for faster alignment of short oligonucleotides onto reference sequences for next generation sequencing data analysis. Maps sites for restriction enzymes (restriction endonucleases) in DNA sequences. Figures may be rendered in PNG, JPG, SVG or SVGZ format.Īnalyzes a DNA sequence to identify Restriction Enzyme Sites and generate a comprehensive map overview of their locations within the DNA sequence. Generates and annotates plasmid maps using only plasmid DNA sequence as input. Tool to visualize sequence alignments and consensus sequences showing the relative frequencies of the bases at each position. ![]() Motif-based analysis of DNA, RNA and protein sequences.Įxamines DNA sequence to find large, non-overlapping open reading frames (ORFs) and sites for all restriction enzymes that cut the sequence just once.Īlignments for multiple protein sequences or structures using information from sequence database searches, secondary structure prediction, available homologs with 3D structures. Predicting the locations and exon-intron structures of genes in genomic sequences from a variety of organisms. Gene Prediction in Bacteria, Archaea and Metagenomes. Reformatting sequences, producing the reverse complement of a sequence, extracting fragments of a sequence, sequence case conversion or any combination of the above functions. Identify and report CpG islands in nucleotide sequences. Generates a codon usage table for the input sequence. Server for the identification of functionally and structurally important residues in protein sequences. Clustering 16S rRNA tags into OTUs (454, Iontorrent and Illumina reads). Clustering analysis of various types of DNAs and RNAs. Creating non-redundant datasets for proteins. Nucleic tools: Primer design.Ī series of programs for sequence comparisons. Protein tools: structure prediction, blast, multiple sequence alignment, randomize sequence. Software system for the analysis, rebuilding, and visualization of three-dimensional nucleic-acid-containing structuresĪnnotation of Microbial Genes for for automatically identifying the most likely CoDing Sequences (CDSs).īLAST Search of Nucleotide, Protein and Genome DatabasesĬompare your query sequence to the working draft sequence of the human genome or its mRNA and protein products. ![]() Online Software for Sequence Analysis Online Primer Design Tools ![]()
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